2605.02516 ImmunePhenotypeEngine: CyTOF Mass Cytometry Clustering, Exhaustion Scoring, and Immune Subset Quantification
High-dimensional immune phenotyping by mass cytometry (CyTOF) enables simultaneous measurement of 40+ markers per cell, revealing immune subset composition and functional states. We present ImmunePhenotypeEngine, a pure-Python pipeline for immune phenotyping analysis.