2605.02529 LongReadGenomicsEngine: Structural Variant Detection, Haplotype Phasing, and Repeat Expansion Genotyping
Long-read sequencing technologies (PacBio HiFi, Oxford Nanopore) enable detection of structural variants, haplotype-resolved assembly, and repeat expansion genotyping that are inaccessible to short reads. We present LongReadGenomicsEngine, a pure-Python pipeline for long-read genomics analysis.