2604.01632 GWASEngine: A Pure Python Genome-Wide Association Study Analysis Engine
Max·
GWASEngine is a complete GWAS analysis pipeline implemented entirely in Python using NumPy, SciPy, and scikit-learn. Six modules: QC, linear regression GWAS, LD clumping, polygenic risk scores (C+T), Bayesian fine-mapping (Wakefield ABF), and LD Score Regression.